Publications
| Total found: 163 records |
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Zhang H.,
Koblížková A., Wang K., Gong Z., Oliveira L., Torres G., Wu Y., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2014) Boom-bust turnovers of megabase-sized centromeric DNA in Solanum species: Rapid evolution of DNA sequences associated with centromeres Plant Cell
26: 1436-1447.
DOI: 10.1105/tpc.114.123877 |
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Heckmann S.,
Macas J., Kumke K., Fuchs J., Schubert V., Ma L.,
Novák P.,
Neumann P., Taudien S., Platzer M., Houben A. (2013) The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization Plant Journal
73: 555-565.
DOI: 10.1111/tpj.12054 |
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Klemme S., Banaei-Moghaddam A.,
Macas J., Wicker T.,
Novák P., Houben A. (2013) High-copy sequences reveal distinct evolution of the rye B chromosome New Phytologist
199: 550-558.
DOI: 10.1111/nph.12289 |
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Kopecký D., Martis M., Cihalikova J., Hřibová E., Vrána J., Bartoš J., Kopecka J., Cattonaro F., Stoces S.,
Novák P., Neumann P., Macas J., Šimková H., Studer B., Asp T., Baird J., Navratil P., Karafiatova M., Kubaláková M., Safar J., Mayer K. (2013) Flow sorting and sequencing meadow fescue chromosome 4F Plant Physiology
163: 1323-1337.
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Lake A.,
Novák P., Shipkova P., Aranibar N., Robertson D., Reily M., Lu Z., Lehman-Mckeeman L., Cherrington N. (2013) Decreased hepatotoxic bile acid composition and altered synthesis in progressive human nonalcoholic fatty liver disease Toxicology and Applied Pharmacology
268: 132-140.
DOI: 10.1016/j.taap.2013.01.022 |
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Novák P.,
Neumann P., Pech J., Steinhaisl J.,
Macas J. (2013) RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads Bioinformatics
29: 792-793.
DOI: 10.1093/bioinformatics/btt054 |
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Renny-Byfield S., Kovařík A., Kelly L.,
Macas J.,
Novák P., Chase M., Nichols R., Pancholi M., Grandbastien M., Leitch A. (2013) Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences. Plant Journal
74: 829-839.
DOI: 10.1111/tpj.12168 |
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Šteflová P., Tokan V., Vogel I., Lexa M., Macas J.,
Novák P., Hobza R., Vyskot B., Kejnovský E. (2013) Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa Genome Biology and Evolution
5: 769-782.
DOI: 10.1093/gbe/evt049 |
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Banaei-Moghaddam A., Schubert V., Kumke K., Weiβ O., Klemme S., Nagaki K.,
Macas J., González-Sánchez M., Heredia V., Gómez-Revilla D., González-García M., Vega J., Puertas-Houben A. (2012) Nondisjunction in Favor of a Chromosome: The Mechanism of Rye B Chromosome Drive during Pollen Mitosis Plant Cell
24: 4124-4134.
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Gong Z., Wu Y.,
Koblížková A., Torres G., Wang K., Iovene M.,
Neumann P., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2012) Repeatless and repeat-based centromeres in potato: implications for centromere evolution Plant Cell
24: 3559-3574.
DOI: 10.1105/tpc.112.100511 |
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Kelly L., Leitch A., Fay M., Renny-Byfield S., Pellicer J.,
Macas J., Leitch I. (2012) Why size really matters when sequencing plant genomes Plant Ecology & Diversity
5: 415-524.
DOI: 10.1080/17550874.2012.716868 |
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Martis M., Klemme S., Banaei-Moghaddam A., Blattner F.,
Macas J., Schmutzer T., Scholz U., Gundlach H., Wicker T., Šimková H.,
Novák P.,
Neumann P., Kubaláková M., Bauer E., Haseneyer G., Fuchs J., Doležel J., Stein N., Mayer K., Houben A. (2012) Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences Proceedings of the National Academy of Sciences of the United States of America
109: 13343-13346.
DOI: 10.1073/pnas.1204237109 |
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Matyášek R., Renny-Byfield S., Fulneček J.,
Macas J., Grandbastien M., Nichols R., Kovařík A., Leitch A. (2012) Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids BMC Genomics
13: 722.
DOI: 10.1186/1471-2164-13-722 |
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Medeiros M., Zheng X.,
Novák P., Wnek S., Chyan V., Escudero-Lourdes C., Gandolfi A. (2012) Global gene expression changes in human urothelial cells exposed to low-level monomethylarsonous acid Toxicology
291: 102-112.
DOI: 10.1016/j.tox.2011.11.002 |
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Neumann P.,
Navrátilová A., Schroeder-Reiter E.,
Koblížková A.,
Steinbauerová V., Chocholová E.,
Novák P., Wanner G.,
Macas J. (2012) Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains. PLoS Genetics
8: e1002777.
DOI: 10.1371/journal.pgen.1002777 |
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Novák P., Stampfer M., Munoz-Rodriguez J., Garbe J., Ehrich M., Futscher B., Jensen T. (2012) Cell-type specific DNA methylation patterns define human breast cellular identity PLoS ONE
7: e52299.
DOI: 10.1371/journal.pone.0052299 |
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Pagán H.,
Macas J.,
Novák P., Mcculloch E., Stevens R., Ray D. (2012) Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats Genome Biology and Evolution
4: 575-585.
DOI: 10.1093/gbe/evs038 |
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Piednoël M., Aberer A., Schneeweiss G.,
Macas J.,
Novák P., Gundlach H., Temsch E., Renner S. (2012) Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae Molecular Biology and Evolution
29: 3601-3611.
DOI: 10.1093/molbev/mss168 |
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Renny-Byfield S., Kovařík A., Chester M., Nichols R., Macas J.,
Novák P., Leitch A. (2012) Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum PLoS ONE
7: e36963.
DOI: 10.1371/journal.pone.0036963 |
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Ambrožová K., Mandáková T., Bureš P.,
Neumann P., Leitch I.,
Koblížková A.,
Macas J., Lysák M. (2011) Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies Annals of Botany
107: 255-268.
DOI: 10.1093/aob/mcq235 |
