Publications
| Total found: 163 records |
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Lake A.,
Novák P., Fisher C., Jackson J., Hardwick R., Billheimer D., Klimecki W., Cherrington N. (2011) Analysis of Global and Absorption, Distribution, Metabolism, and Elimination Gene Expression in the Progressive Stages of Human Nonalcoholic Fatty Liver Disease Drug Metabolism and Disposition
39: 1954-1960.
DOI: 10.1124/dmd.111.040592 |
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Macas J., Kejnovský E.,
Neumann P.,
Novák P.,
Koblížková A., Vyskot B. (2011) Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia PLoS ONE
6: e27335.
DOI: 10.1371/journal.pone.0027335 |
| Neumann P., Navrátilová A., Koblížková A., Kejnovský E., Hřibová E., Hobza R., Widmer A., Doležel J., Macas J. (2011) Plant centromeric retrotransposons: a structural and cytogenetic perspective Mobile DNA 2: DOI: 10.1186/1759-8753-2-4 |
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Renny-Byfield S., Chester M., Kovařík A., Le Comber S., Grandbastien M., Deloger M., Nichols R., Macas J.,
Novák P., Chase M., Leitch A. (2011) Next generation sequencing reveals genome downsizing in allopolyploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs Molecular Biology and Evolution
28: 2843-2854.
DOI: 10.1093/molbev/msr112 |
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Steinbauerová V.,
Neumann P.,
Novák P.,
Macas J. (2011) A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons Genetica
139: 1543-1555.
DOI: 10.1007/s10709-012-9654-9 |
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Torres G., Gong Z., Iovene M., Hirsch C., Buell C., Bryan G.,
Novák P., Macas J., Jiang J. (2011) Organization and evolution of subtelomeric satellite repeats in the potato genome G3: Genes, Genomes, Genetics
1: 85-92.
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Hřibová E.,
Neumann P., Matsumoto T., Roux N.,
Macas J., Doležel J. (2010) Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing BMC Plant Biology
10: 1-10.
DOI: 10.1186/1471-2229-10-204 |
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Macas J.,
Neumann P.,
Novák P., Jiang J. (2010) Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data Bioinformatics
26: 2101-2108.
DOI: 10.1093/bioinformatics/btq343 |
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Novák P.,
Neumann P.,
Macas J. (2010) Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data BMC Bioinformatics
11: 378-389.
DOI: 10.1186/1471-2105-11-378 |
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Jensen T.,
Novák P., Wnek S., Gandolfi A., Futscher B. (2009) Arsenicals produce stable progressive changes in DNA methylation patterns that are linked to malignant transformation of immortalized urothelial cells Toxicology and Applied Pharmacology
241: 221-229.
DOI: 10.1016/j.taap.2009.08.019 |
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Macas J.,
Koblížková A.,
Navrátilová A.,
Neumann P. (2009) Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats Gene
448: 198-206.
DOI: 10.1016/j.gene.2009.06.014 |
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Novák P., Jensen T., Garbe J., Sampfer M., Futscher B. (2009) Stepwise DNA Methylation Changes Are Linked to Escape from Defined Proliferation Barriers and Mammary Epithelial Cell Immortalization Cancer Research
69: 5251-5258.
DOI: 10.1158/0008-5472.CAN-08-4977 |
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Smýkal P., Kalendar R., Ford R.,
Macas J., Griga M. (2009) Evolutionary conserved lineage of Angela-family retrotransposons as a genome-wide microsatellite repeat dispersal agent Heredity
103: 157-167.
DOI: 10.1038/hdy.2009.45 |
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Čermák T., Kubát Z., Hobza R.,
Koblížková A., Widmer A.,
Macas J., Vyskot B., Kejnovský E. (2008) Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes Chromosome Research
16: 961-976.
DOI: 10.1007/s10577-008-1254-2 |
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Jensen T.,
Novák P., Eblin K., Gandolfi A., Futscher B. (2008) Epigenetic remodeling during arsenical-induced malignant transformation Carcinogenesis
29: 1500-1508.
DOI: 10.1093/carcin/bgn102 |
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Vrba , Junk D.,
Novák P., Futscher B. (2008) P53 induces distinct epigenetic states at its direct target promoters BMC Genomics
9: 486.
DOI: 10.1186/1471-2164-9-486 |
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Navrátilová A.,
Koblížková A.,
Macas J. (2008) Survey of extrachromosomal circular DNA derived from plant satellite repeats BMC Plant Biology
8: 90.
DOI: 10.1186/1471-2229-8-90 |
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Novák P., Jensen T., Oshiro M., Watts G., Kim C., Futscher B. (2008) Agglomerative epigenetic aberrations are a common event in human breast cancer Cancer Research
68: 8616-8625.
DOI: 10.1158/0008-5472.CAN-08-1419 |
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Steinbauerová V.,
Neumann P.,
Macas J. (2008) Experimental evidence for splicing of intron-containing transcripts of plant LTRL retrotransposon Ogre Molecular Genetics and Genomics
280: 427-436.
DOI: 10.1007/s00438-008-0376-8 |
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Hřibová E., Doleželová M., Town C.,
Macas J., Doležel J. (2007) Isolation and characterization of the highly repeated fraction of the banana genome Cytogenetics and Genome Research
119: 268-274.
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