Ing. Pavel Neumann, Ph.D.

Job Position: Research Scientist - Molecular cytogenetics

Contact details

Phone: 420387775511; 420387775516
E-mail: neumann@umbr.cas.cz
Web: w3lamc.umbr.cas.cz/lamc/
Room: 109,101

Publications
Total found: 49 records
Kreplak J., Madoui M., Cápal P., Novák P., Labadie K., Aubert G., Bayer P.E., Gali K.K., Syme R.A., Main D., Klein A., Bérard A., Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H.T., Kougbeadjo A., Térézol M., Huneau C., Turo Ch.J., Mohellibi N., Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J.-M., Batley J., Le Paslier M.-Ch., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J., Macas J., Doležel J., Wincker P., Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nature Genetics 51 : 1411–1422.
DOI: 10.1038/s41588-019-0480-1
Neumann P., Novák P., Hoštáková N., Macas J. (2019) Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification Mobile DNA 10 : DOI: 10.1186/s13100-018-0144-1
Vondrak T., Avila Robledillo L., Novák P., Koblížková A., Neumann P., Macas J. (2019) Characterization of repeat arrays in ultra-long nanopore reads reveals frequent origin of satellite DNA from retrotransposon-derived tandem repeats The Plant Journal accepted : DOI: 10.1111/tpj.14546
Avila Robledillo L., Koblížková A., Novák P., Böttinger K., Vrbová I., Neumann P., Schubert I., Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports 8 : 5838.
DOI: 10.1038/s41598-018-24196-3
Novák P., Avila Robledillo L., Koblížková A., Vrbová I., Neumann P., Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research 45 (12) : e11.
DOI: 10.1093/nar/gkx257
Wang G., He Q., Macas J., Novák P., Neumann P., Meng D., Zhao H., Guo N., Han S., Zong M., Jin W., Liu F. (2017) Karyotypes and distribution of tandem repeat sequences in Brassica nigra determined by fluorescence in situ hybridization Cytogenetics and genome research 152 : 158-165.
DOI: 10.1159/000479179
Neumann P., Schubert V., Fuková I., Manning Jr J., Houben A., Macas J. (2016) Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes Frontiers in plant science 7 : 234.
DOI: 10.3389/fpls.2016.00234
Kelly L., Renny-Byfield S., Pellicer J., Macas J., Novák P., Neumann P., Lysák M., Day P., Berger M., Fay M., Nichols R., Leitch A., Leitch I. (2015) Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size New Phytologist 208 : 596-607.
DOI: 10.1111/nph.13471
Macas J., Novák P., Pellicer J., Čížková J., Koblížková A., Neumann P., Fuková I., Doležel J., Kelly L., Leitch I. (2015) In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae PLoS ONE 10 (11) : e0143424.
DOI: 10.1371/journal.pone.0143424
Marques A., Ribeiro T., Neumann P., Macas J., Novák P., Schubert V., Pellino M., Fuchs J., Ma W., Kuhlmann M., Brandt R., Vanzela A., Beseda T., Šimková H., Pedrosa-Harand A., Houben A. (2015) Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin Proceedings of the National Academy of Sciences of the United States of America 112 : 13633-13638.
DOI: 10.1073/pnas.1512255112
Neumann P., Pavliková Z., Koblížková A., Fuková I., Jedličková V., Novák P., Macas J. (2015) Centromeres off the hook: massive changes in centromere size and structure following duplication of CenH3 gene in Fabeae species Molecular biology and evolution 32 (7) : 1862-1879.
DOI: 10.1093/molbev/msv070
Tran T., Cao H., Jovtchev G., Neumann P., Novák P., Fojtová M., Vu G., Macas J., Fajkus J., Schubert I., Fuchs J. (2015) Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea Plant Journal 84 (6) : 1087-1099.
DOI: http://dx.doi.org/10.1111/tpj.13058
Vu G., Schmutzer T., Bull F., Cao H., Fuchs J., Tran T., Jovtchev G., Pistrick K., Stein N., Pečinka A., Neumann P., Novák P., Macas J., Dear P., Blattner F., Scholz U., Schubert I. (2015) Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus Plant Genome 8 : DOI: 10.3835/plantgenome2015.04.0021
Novák P., Hřibová E., Neumann P., Koblížková A., Doležel J., Macas J. (2014) Genome-wide analysis of repeat diversity across the family Musaceae PLoS ONE 9 : e98918.
DOI: 10.1371/journal.pone.0098918
Heckmann S., Macas J., Kumke K., Fuchs J., Schubert V., Ma L., Novák P., Neumann P., Taudien S., Platzer M., Houben A. (2013) The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization Plant Journal 73 : 555-565.
DOI: 10.1111/tpj.12054
Novák P., Neumann P., Pech J., Steinhaisl J., Macas J. (2013) RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads Bioinformatics 29 : 792-793.
DOI: 10.1093/bioinformatics/btt054
Gong Z., Wu Y., Koblížková A., Torres G., Wang K., Iovene M., Neumann P., Zhang W., Novák P., Buell C., Macas J., Jiang J. (2012) Repeatless and repeat-based centromeres in potato: implications for centromere evolution Plant Cell 24 : 3559-3574.
DOI: 10.1105/tpc.112.100511
Martis M., Klemme S., Banaei-Moghaddam A., Blattner F., Macas J., Schmutzer T., Scholz U., Gundlach H., Wicker T., Šimková H., Novák P., Neumann P., Kubaláková M., Bauer E., Haseneyer G., Fuchs J., Doležel J., Stein N., Mayer K., Houben A. (2012) Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences Proceedings of the National Academy of Sciences of the United States of America 109 : 13343-13346.
DOI: 10.1073/pnas.1204237109
Neumann P., Navrátilová A., Schroeder-Reiter E., Koblížková A., Steinbauerová V., Chocholová E., Novák P., Wanner G., Macas J. (2012) Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains. PLoS Genetics 8 : e1002777.
DOI: 10.1371/journal.pgen.1002777
Ambrožová K., Mandáková T., Bureš P., Neumann P., Leitch I., Koblížková A., Macas J., Lysák M. (2011) Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies Annals of Botany 107 : 255-268.
DOI: 10.1093/aob/mcq235

More publications

CONTACT

Biology Centre CAS
Institute of Plant Molecular Biology
Branišovská 1160/31
370 05 České Budějovice

Staff search