Mgr. Andrea Koblížková

Job Position: Associated scientist - Molecular cytogenetics

Contact details

Phone: 420387775513; 420387775511
Room: 107

Total found: 29 records
Vondrak T., Avila Robledillo L., Novák P., Koblížková A., Neumann P., Macas J. (2019) Genome-wide characterization of satellite DNA arrays in a complex plant genome using nanopore reads bioRxiv 677575 : DOI: 10.1101/677575
Avila Robledillo L., Koblížková A., Novák P., Böttinger K., Vrbová I., Neumann P., Schubert I., Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports 8 : 5838.
DOI: 10.1038/s41598-018-24196-3
Novák P., Avila Robledillo L., Koblížková A., Vrbová I., Neumann P., Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research 45 (12) : e11.
DOI: 10.1093/nar/gkx257
Kowar T., Zakrzewski F., Macas J., Koblížková A., Viehoever P., Weisshaar B., Schmidt T. (2016) Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta Vulgaris) BMC Plant biology 16 : 120.
DOI: 10.1186/s12870-016-0805-5
Macas J., Novák P., Pellicer J., Čížková J., Koblížková A., Neumann P., Fuková I., Doležel J., Kelly L., Leitch I. (2015) In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae PLoS ONE 10 (11) : e0143424.
DOI: 10.1371/journal.pone.0143424
Neumann P., Pavliková Z., Koblížková A., Fuková I., Jedličková V., Novák P., Macas J. (2015) Centromeres off the hook: massive changes in centromere size and structure following duplication of CenH3 gene in Fabeae species Molecular biology and evolution 32 (7) : 1862-1879.
DOI: 10.1093/molbev/msv070
Novák P., Hřibová E., Neumann P., Koblížková A., Doležel J., Macas J. (2014) Genome-wide analysis of repeat diversity across the family Musaceae PLoS ONE 9 : e98918.
DOI: 10.1371/journal.pone.0098918
Zhang H., Koblížková A., Wang K., Gong Z., Oliveira L., Torres G., Wu Y., Zhang W., Novák P., Buell C., Macas J., Jiang J. (2014) Boom-bust turnovers of megabase-sized centromeric DNA in Solanum species: Rapid evolution of DNA sequences associated with centromeres Plant Cell 26 : 1436-1447.
DOI: 10.1105/tpc.114.123877
Gong Z., Wu Y., Koblížková A., Torres G., Wang K., Iovene M., Neumann P., Zhang W., Novák P., Buell C., Macas J., Jiang J. (2012) Repeatless and repeat-based centromeres in potato: implications for centromere evolution Plant Cell 24 : 3559-3574.
DOI: 10.1105/tpc.112.100511
Neumann P., Navrátilová A., Schroeder-Reiter E., Koblížková A., Steinbauerová V., Chocholová E., Novák P., Wanner G., Macas J. (2012) Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains. PLoS Genetics 8 : e1002777.
DOI: 10.1371/journal.pgen.1002777
Ambrožová K., Mandáková T., Bureš P., Neumann P., Leitch I., Koblížková A., Macas J., Lysák M. (2011) Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies Annals of Botany 107 : 255-268.
DOI: 10.1093/aob/mcq235
Macas J., Kejnovský E., Neumann P., Novák P., Koblížková A., Vyskot B. (2011) Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia PLoS ONE 6 : e27335.
DOI: 10.1371/journal.pone.0027335
Neumann P., Navrátilová A., Koblížková A., Kejnovský E., Hřibová E., Hobza R., Widmer A., Doležel J., Macas J. (2011) Plant centromeric retrotransposons: a structural and cytogenetic perspective Mobile DNA 2 : DOI: 10.1186/1759-8753-2-4
Macas J., Koblížková A., Navrátilová A., Neumann P. (2009) Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats Gene 448 : 198-206.
DOI: 10.1016/j.gene.2009.06.014
Čermák T., Kubát Z., Hobza R., Koblížková A., Widmer A., Macas J., Vyskot B., Kejnovský E. (2008) Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes Chromosome Research 16 : 961-976.
DOI: 10.1007/s10577-008-1254-2
Navrátilová A., Koblížková A., Macas J. (2008) Survey of extrachromosomal circular DNA derived from plant satellite repeats BMC Plant Biology 8 : 90.
DOI: 10.1186/1471-2229-8-90
Macas J., Navrátilová A., Koblížková A. (2006) Sequence homogenization and chromosomal localization of VicTR-B satellites differ between closely related Vicia species Chromosoma 115 : 437-447.
Neumann P., Koblížková A., Navratilová A., Macas J. (2006) Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement Genetics 173 : 1047-1056.
Macas J., Koblížková A., Neumann P. (2005) Characterization of Stowaway MITEs in pea (Pisum sativum L.) and identification of their potential master elements Genome 48 : 831-839.
Neumann P., Požárková D., Koblížková A., Macas J. (2005) PIGY, a new plant envelope-class LTR retrotransposon Molecular Genetics and Genomics 273 : 43-53.

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Biology Centre CAS
Institute of Plant Molecular Biology
Branišovská 1160/31
370 05 České Budějovice

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