RNDr. Jiří Macas, Ph.D.

Job Position: Head of department - Molecular cytogenetics , Statutory representative

Contact details

Phone: 420387775513; 420387775516
E-mail: macas@umbr.cas.cz
Web: w3lamc.umbr.cas.cz/lamc/
Room: 107,101

Publications
Total found: 105 records
Finke A., Mandáková T., Nawaz K., Vu G., Novák P., Macas J., Lysak M.A., Pečinka A. (2019) Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda The Plant journal on-line first : DOI: doi.org/10.1111/tpj.14380
Kapustová V., Tulpová Z., Toegelová H., Novák P., Macas J., Karafiátová M., Doležel J., Šimková H. (2019) The Dark Matter of Large Cereal Genomes: Long Tandem Repeats International journal of molecular sciences 20 (10) : 2483.
DOI: 10.3390/ijms20102483
Kreplak J., Madoui M., Cápal P., Novák P., Labadie K., Aubert G., Bayer P.E., Gali K.K., Syme R.A., Main D., Klein A., Bérard A., Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H.T., Kougbeadjo A., Térézol M., Huneau C., Turo Ch.J., Mohellibi N., Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J.-M., Batley J., Le Paslier M.-Ch., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J., Macas J., Doležel J., Wincker P., Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution Nature Genetics 51 : 1411–1422.
DOI: 10.1038/s41588-019-0480-1
Neumann P., Novák P., Hoštáková N., Macas J. (2019) Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification Mobile DNA 10 : DOI: 10.1186/s13100-018-0144-1
Tulpová Z., Toegelová H., Lapitan N.L.V., Peairs F.B., Macas J., Novák P., Lukaszewski A.J., Kopecký D., Mazáčová M., Vrána J., Holušová K., Leroy P., Doležel J., Šimková H. (2019) Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies The Plant Genome 12 (2) : DOI: 10.3835/ plantgenome2018.09.0065
Vondrak T., Avila Robledillo L., Novák P., Koblížková A., Neumann P., Macas J. (2019) Genome-wide characterization of satellite DNA arrays in a complex plant genome using nanopore reads bioRxiv 677575 : DOI: 10.1101/677575
Wu D.D., Ruban A., Fuchs J., Macas J., Novák P., Vaio M., Zhou Y.H., Houben A. (2019) Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes New Phytologist 223 : 1340–1352.
DOI: 10.1111/nph.15875
Avila Robledillo L., Koblížková A., Novák P., Böttinger K., Vrbová I., Neumann P., Schubert I., Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports 8 : 5838.
DOI: 10.1038/s41598-018-24196-3
McCann J., Jang T., Macas J., Schneeweiss G., Matzke N.J., Novák P., Stuessy T.F., Villasenor J.L., Weiss-Schneeweiss H. (2018) Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae) Systematic Biology 67 (6) : 1010–1024.
DOI: 10.1093/sysbio/syy024
Novák P., Avila Robledillo L., Koblížková A., Vrbová I., Neumann P., Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research 45 (12) : e11.
DOI: 10.1093/nar/gkx257
Ribeiro T., Marques A., Novák P., Schubert V., Vanzela A., Macas J., Houben A., Pedrosa-Harand A. (2017) Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species Chromosoma 126 : 325-335.
DOI: 10.1007/s00412-016-0616-3
Wang G., He Q., Macas J., Novák P., Neumann P., Meng D., Zhao H., Guo N., Han S., Zong M., Jin W., Liu F. (2017) Karyotypes and distribution of tandem repeat sequences in Brassica nigra determined by fluorescence in situ hybridization Cytogenetics and genome research 152 : 158-165.
DOI: 10.1159/000479179
Boutte J., Aliaga B., Lima O., Carvalho J., Ainouche A., Macas J., Rousseau-Gueutin M., Coriton O., Ainouche M., Salmon A. (2016) Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima G3: Genes, Genomes, Genetics 6 : 29-40.
DOI: 10.1534/g3.115.023242
Kowar T., Zakrzewski F., Macas J., Koblížková A., Viehoever P., Weisshaar B., Schmidt T. (2016) Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta Vulgaris) BMC Plant biology 16 : 120.
DOI: 10.1186/s12870-016-0805-5
Kumke K., Macas J., Fuchs J., Altschmied L., Kour J., Dhar M., Houben A. (2016) Plantago lagopus B Chromosome Is Enriched in 5S rDNA-Derived Satellite DNA Cytogenetic and genome research 148 : 68-73.
DOI: 10.1159/000444873
Neumann P., Schubert V., Fuková I., Manning Jr J., Houben A., Macas J. (2016) Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes Frontiers in plant science 7 : 234.
DOI: 10.3389/fpls.2016.00234
Badaeva E., Amosova A., Goncharov N., Macas J., Ruban A., Grechishnikova I., Zoshchuk S., Houben A. (2015) A set of cytogenetic markers allows the precise identification of all A-genome chromosomes in diploid and polyploidy wheat Cytogenetic and genome research 146 : 71-79.
Banaei-Moghaddam A., Martis M., Macas J., Gundlach H., Himmelbach A., Altschmied L., Mayer K., Houben A. (2015) Genes on B chromosomes: Old questions revisited with new tools Biochimica et Biophysica Acta - Gene Regulatory Mechanisms 1849 : 64-70.
DOI: 10.1016/j.bbagrm.2014.11.007
Dodsworth S., Chase M., Kelly L., Leitch I., Novák P., Macas J., Piednoël M., Weiss-Schneeweiss H., Leitch A. (2015) Genomic Repeat Abundances Contain Phylogenetic Signal Systematic biology 64 : 112-126.
DOI: 10.1093/sysbio/syu080
Kelly L., Renny-Byfield S., Pellicer J., Macas J., Novák P., Neumann P., Lysák M., Day P., Berger M., Fay M., Nichols R., Leitch A., Leitch I. (2015) Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size New Phytologist 208 : 596-607.
DOI: 10.1111/nph.13471

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CONTACT

Biology Centre CAS
Institute of Plant Molecular Biology
Branišovská 1160/31
370 05 České Budějovice

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