Ing. Petr Novák, Ph.D.

Job Position: Research Scientist - Molecular cytogenetics

Contact details

Phone: 420387775575
E-mail: petr@umbr.cas.cz
Web: w3lamc.umbr.cas.cz/lamc/
Room: 147

Publications
Total found: 68 records
Finke A., Mandáková T., Nawaz K., Vu G., Novák P., Macas J., Lysak M.A., Pečinka A. (2019) Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda The Plant Journal 99 : 1066–1079.
DOI: doi.org/10.1111/tpj.14380
Kapustová V., Tulpová Z., Toegelová H., Novák P., Macas J., Karafiátová M., Doležel J., Šimková H. (2019) The Dark Matter of Large Cereal Genomes: Long Tandem Repeats International journal of molecular sciences 20 (10) : 2483.
DOI: 10.3390/ijms20102483
Kreplak J., Madoui M., Cápal P., Novák P., Labadie K., Aubert G., Bayer P.E., Gali K.K., Syme R.A., Main D., Klein A., Bérard A., Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H.T., Kougbeadjo A., Térézol M., Huneau C., Turo Ch.J., Mohellibi N., Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J.-M., Batley J., Le Paslier M.-Ch., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J., Macas J., Doležel J., Wincker P., Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nature Genetics 51 : 1411–1422.
DOI: 10.1038/s41588-019-0480-1
Neumann P., Novák P., Hoštáková N., Macas J. (2019) Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification Mobile DNA 10 : DOI: 10.1186/s13100-018-0144-1
Tulpová Z., Toegelová H., Lapitan N.L.V., Peairs F.B., Macas J., Novák P., Lukaszewski A.J., Kopecký D., Mazáčová M., Vrána J., Holušová K., Leroy P., Doležel J., Šimková H. (2019) Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies The Plant Genome 12 (2) : DOI: 10.3835/ plantgenome2018.09.0065
Vondrak T., Avila Robledillo L., Novák P., Koblížková A., Neumann P., Macas J. (2019) Characterization of repeat arrays in ultra-long nanopore reads reveals frequent origin of satellite DNA from retrotransposon-derived tandem repeats The Plant Journal accepted : DOI: 10.1111/tpj.14546
Wu D.D., Ruban A., Fuchs J., Macas J., Novák P., Vaio M., Zhou Y.H., Houben A. (2019) Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes New Phytologist 223 : 1340–1352.
DOI: 10.1111/nph.15875
Avila Robledillo L., Koblížková A., Novák P., Böttinger K., Vrbová I., Neumann P., Schubert I., Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports 8 : 5838.
DOI: 10.1038/s41598-018-24196-3
McCann J., Jang T., Macas J., Schneeweiss G., Matzke N.J., Novák P., Stuessy T.F., Villasenor J.L., Weiss-Schneeweiss H. (2018) Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae) Systematic Biology 67 (6) : 1010–1024.
DOI: 10.1093/sysbio/syy024
Clarke J.D., Novák P., Lake A., Hardwick R., Cherrington N. (2017) Impaired N-linked glycosylation of uptake and efflux transporters in human non-alcoholic fatty liver disease Liver International 37 (7) : 1074-1081.
DOI: 10.1111/liv.13362
Han J.H., Dzierlenga A.L., Lu Z., Billheimer D., Torabzadeh E., Lake A., Li H., Novák P., Shipkova P., Aranibar N. (2017) Metabolomic Profiling Distinction of Human Nonalcoholic Fatty Liver Disease Progression from a Common Rat Model Obesity 26 (6) : 1069-1076.
DOI: 10.1002/oby.21855
Novák P., Avila Robledillo L., Koblížková A., Vrbová I., Neumann P., Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research 45 (12) : e11.
DOI: 10.1093/nar/gkx257
Ribeiro T., Marques A., Novák P., Schubert V., Vanzela A., Macas J., Houben A., Pedrosa-Harand A. (2017) Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species Chromosoma 126 : 325-335.
DOI: 10.1007/s00412-016-0616-3
Wang G., He Q., Macas J., Novák P., Neumann P., Meng D., Zhao H., Guo N., Han S., Zong M., Jin W., Liu F. (2017) Karyotypes and distribution of tandem repeat sequences in Brassica nigra determined by fluorescence in situ hybridization Cytogenetics and genome research 152 : 158-165.
DOI: 10.1159/000479179
Lake A., Chaput A.L., Novák P., Cherrington N., Smith C.L. (2016) Transcription factor binding site enrichment analysis predicts drivers of altered gene expression in nonalcoholic steatohepatitis Biochemical Pharmacology 122 : 62-71.
DOI: 10.1016/j.bcp.2016.11.006
Dodsworth S., Chase M., Kelly L., Leitch I., Novák P., Macas J., Piednoël M., Weiss-Schneeweiss H., Leitch A. (2015) Genomic Repeat Abundances Contain Phylogenetic Signal Systematic biology 64 : 112-126.
DOI: 10.1093/sysbio/syu080
Kelly L., Renny-Byfield S., Pellicer J., Macas J., Novák P., Neumann P., Lysák M., Day P., Berger M., Fay M., Nichols R., Leitch A., Leitch I. (2015) Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size New Phytologist 208 : 596-607.
DOI: 10.1111/nph.13471
Lake A., Novák P., Shipkova P., Aranibar N., Robertson D., Reily M., Lehman-Mckeeman L., Vaillancourt R., Cherrington N. (2015) Branched chain amino acid metabolism profiles in progressive human nonalcoholic fatty liver disease Amino Acids 47 : 603-615.
DOI: 10.1007/s00726-014-1894-9
Lang J., Zhu W.Z., Nokes B., Sheth G., Novák P., Fuchs L., Watts G., Futscher B., Mineyev N., Ring A., Lebeau L., Nagle R., Cranmer L. (2015) Characterization of a Novel Radiation-Induced Sarcoma Cell Line Journal of Surgical Oncology 111 : 669-682.
DOI: 10.1002/jso.23860
Lang J., Scott J., Wolf D.M., Novák P., Punj V., Magbanua M., Zhu W., Mineyev N., Haqq C., Crothers J., Esserman L., Tripathy D., Veer L., Park J. (2015) Expression profiling of circulating tumor cells in metastatic breast cancer Breast Cancer Research and Treatment 149 : 121-131.
DOI: 10.1007/s10549-014-3215-0

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CONTACT

Biology Centre CAS
Institute of Plant Molecular Biology
Branišovská 1160/31
370 05 České Budějovice

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