Ing. Petr Novák, Ph.D.

Job Position: Research Scientist - Molecular cytogenetics

Contact details

Phone: 420387775575
E-mail: petr@umbr.cas.cz
Web: w3lamc.umbr.cas.cz/lamc/
Room: 147

Publications
Total found: 75 records
Ainouche A., Paris A., Giraud D., Keller J., Raimondeau P., Mahé P., Neumann P., Novák P., Macas J., Ainouche M., Salmon A., Martin G.E. (2020) The Repetitive Content in Lupin Genomes In: Singh K., Kamphuis L., Nelson M. (eds) The Lupin Genome. Compendium of Plant Genomes. 161-168.
Avila Robledillo L., Neumann P., Koblížková A., Novák P., Vrbová I., Macas J. (2020) Extraordinary sequence diversity and promiscuity of centromeric satellites in the legume tribe Fabeae Molecular biology and evolution 37 : 2341-2356.
DOI: 10.1093/molbev/msaa090
Hoang P.T.N., Fiebig A., Novák P., Macas J., Cao H., Stepanenko A., Chen G., Borisjuk N., Scholz U., Schubert I. (2020) Chromosome-scale genome assembly for the duckweed /Spirodela intermedia/, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries Scientific Reports 10 : 19230.
DOI: 10.1038/s41598-020-75728-9
McCann J., Macas J., Novák P., Stuessy T.F., Villasenor J.L., Weiss-Schneeweiss H. (2020) Differential Genome Size and Repetitive DNA Evolution in Diploid Species of Melampodium sect. Melampodium (Asteraceae) Frontiers in Plant Science 11 : 362.
DOI: 10.3389/fpls.2020.00362
Neumann P., Oliveira L., Čížková J., Jang T., Klemme S., Novák P., Stelmach K., Koblížková A., Doležel J., Macas J. (2020) Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta New Phytologist accepted : DOI: 10.1111/nph.17003
Novák P., Guignard M.S., Neumann P., Kelly L., Mlinarec J., Koblížková A., Dodsworth S., Kovařík A., Pellicer J., Wang W., Macas J., Leicht I.J., Leicht A. (2020) Repeat-sequence turnover shifts fundamentally in species with large genomes Nature Plants 6 : 1325–1329.
DOI: 10.1038/s41477-020-00785-x
Novák P., Neumann P., Macas J. (2020) Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2 Nature Protocols 15 : 3745-3776.
DOI: 10.1038/s41596-020-0400-y
Vondrak T., Avila Robledillo L., Novák P., Koblížková A., Neumann P., Macas J. (2020) Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats The Plant Journal 101 : 484–500.
DOI: 10.1111/tpj.14546
Finke A., Mandáková T., Nawaz K., Vu G., Novák P., Macas J., Lysak M.A., Pečinka A. (2019) Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda The Plant Journal 99 : 1066–1079.
DOI: doi.org/10.1111/tpj.14380
Kapustová V., Tulpová Z., Toegelová H., Novák P., Macas J., Karafiátová M., Doležel J., Šimková H. (2019) The Dark Matter of Large Cereal Genomes: Long Tandem Repeats International journal of molecular sciences 20 (10) : 2483.
DOI: 10.3390/ijms20102483
Kreplak J., Madoui M., Cápal P., Novák P., Labadie K., Aubert G., Bayer P.E., Gali K.K., Syme R.A., Main D., Klein A., Bérard A., Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H.T., Kougbeadjo A., Térézol M., Huneau C., Turo Ch.J., Mohellibi N., Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J.-M., Batley J., Le Paslier M.-Ch., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J., Macas J., Doležel J., Wincker P., Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nature Genetics 51 : 1411–1422.
DOI: 10.1038/s41588-019-0480-1
Neumann P., Novák P., Hoštáková N., Macas J. (2019) Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification Mobile DNA 10 : DOI: 10.1186/s13100-018-0144-1
Tulpová Z., Toegelová H., Lapitan N.L.V., Peairs F.B., Macas J., Novák P., Lukaszewski A.J., Kopecký D., Mazáčová M., Vrána J., Holušová K., Leroy P., Doležel J., Šimková H. (2019) Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies The Plant Genome 12 (2) : DOI: 10.3835/ plantgenome2018.09.0065
Wu D.D., Ruban A., Fuchs J., Macas J., Novák P., Vaio M., Zhou Y.H., Houben A. (2019) Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes New Phytologist 223 : 1340–1352.
DOI: 10.1111/nph.15875
Avila Robledillo L., Koblížková A., Novák P., Böttinger K., Vrbová I., Neumann P., Schubert I., Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports 8 : 5838.
DOI: 10.1038/s41598-018-24196-3
McCann J., Jang T., Macas J., Schneeweiss G., Matzke N.J., Novák P., Stuessy T.F., Villasenor J.L., Weiss-Schneeweiss H. (2018) Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae) Systematic Biology 67 (6) : 1010–1024.
DOI: 10.1093/sysbio/syy024
Clarke J.D., Novák P., Lake A., Hardwick R., Cherrington N. (2017) Impaired N-linked glycosylation of uptake and efflux transporters in human non-alcoholic fatty liver disease Liver International 37 (7) : 1074-1081.
DOI: 10.1111/liv.13362
Han J.H., Dzierlenga A.L., Lu Z., Billheimer D., Torabzadeh E., Lake A., Li H., Novák P., Shipkova P., Aranibar N. (2017) Metabolomic Profiling Distinction of Human Nonalcoholic Fatty Liver Disease Progression from a Common Rat Model Obesity 26 (6) : 1069-1076.
DOI: 10.1002/oby.21855
Novák P., Avila Robledillo L., Koblížková A., Vrbová I., Neumann P., Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research 45 (12) : e11.
DOI: 10.1093/nar/gkx257
Ribeiro T., Marques A., Novák P., Schubert V., Vanzela A., Macas J., Houben A., Pedrosa-Harand A. (2017) Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species Chromosoma 126 : 325-335.
DOI: 10.1007/s00412-016-0616-3

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CONTACT

Biology Centre CAS
Institute of Plant Molecular Biology
Branišovská 1160/31
370 05 České Budějovice

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