Total found: 64 records
Oliveira L., Neumann P., Mata-Sucre Y., Kuo Y.-T., Marques A., Schubert V., Macas J. (2024) KNL1 and NDC80 represent new universal markers for the detection of centromeres in plants. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 3(1): 3.
DOI: 10.1007/s10577-024-09747-x
Xin H., Wang Y., Zhang W., Yu B., Neumann P., Ning Y., Zhang T., Wu Y., Jiang N., Jiang J., Xi M. (2024) Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes Plant Physiology on-line first: DOI: 0.1093/plphys/kiae214
Jayakodi M., Golicz A.A., Kreplak J., Fechete L.I., ..., Koblížková A., Neumann P., Novák P., Avila Robledillo L., Macas J., et al. (2023) The giant diploid faba genome unlocks variation in a global protein crop Nature 615 (7953): 652–659.
DOI: 10.1038/s41586-023-05791-5
Kuo Y.-T., Camara A.S., Schubert V., Neumann P., Macas J., Melzer M., Chen J., Fuchs J., Abel S., Klocke E., Huettel B., Himmelbach A., Demidov D., Dunemann F., Mascher M., Ishii T., Marques A., Houben A. (2023) Holocentromeres can consist of merely a few megabase-sized satellite arrays Nature Communications 14: 3502.
DOI: 10.1038/s41467-023-38922-7
Macas J., Avila Robledillo L., Kreplak J., Novák P., Koblížková A., Vrbová I., Burstin J., Neumann P. (2023) Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes PLoS Genetics 19(2): e1010633.
DOI: 10.1371/journal.pgen.1010633
Neumann P., Oliveira L., Jang T., Novák P., Koblížková A., Schubert V., Houben A., Macas J. (2023) Disruption of the standard kinetochore in holocentric Cuscuta species Proceedings of the National Academy of Sciences 120: e2300877120.
DOI: 10.1073/pnas.230087712
Hofstatter P.G., Thangavel G., Lux T., Neumann P., Vondrak T., Novák P., Zhang M., Costa L., Castellani M., Scott A., Toegelová H., Fuchs J., Mata-Sucre Y., Dias Y., Vanzela A., Huettel B., Almeida C.C.S., Šimková H., Souza G., Pedrosa-Harand A., Macas J., Mayer K., Houben A., Marques A. (2022) Repeat-based holocentromeres influence genome architecture and karyotype evolution Cell 185: 1-16.
DOI: 10.1016/j.cell.2022.06.045
Neumann P., Oliveira L., Čížková J., Jang T., Klemme S., Novák P., Stelmach K., Koblížková A., Doležel J., Macas J. (2021) Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta New Phytologist 229: 2365–2377.
DOI: 10.1111/nph.17003
Vondrak T., Oliveira L., Novák P., Koblížková A., Neumann P., Macas J. (2021) Complex sequence organization of heterochromatin in the holocentric plant Cuscuta europaea elucidated by the computational analysis of nanopore reads Computational and Structural Biotechnology Journal 19: 2179-2189.
DOI: 0.1016/j.csbj.2021.04.011
Ainouche A., Paris A., Giraud D., Keller J., Raimondeau P., Mahé P., Neumann P., Novák P., Macas J., Ainouche M., Salmon A., Martin G.E. (2020) The Repetitive Content in Lupin Genomes In: Singh K., Kamphuis L., Nelson M. (eds) The Lupin Genome. Compendium of Plant Genomes. 161-168.
Avila Robledillo L., Neumann P., Koblížková A., Novák P., Vrbová I., Macas J. (2020) Extraordinary sequence diversity and promiscuity of centromeric satellites in the legume tribe Fabeae Molecular biology and evolution 37: 2341-2356.
DOI: 10.1093/molbev/msaa090
Novák P., Guignard M.S., Neumann P., Kelly L., Mlinarec J., Koblížková A., Dodsworth S., Kovařík A., Pellicer J., Wang W., Macas J., Leicht I.J., Leicht A. (2020) Repeat-sequence turnover shifts fundamentally in species with large genomes Nature Plants 6: 1325–1329.
DOI: 10.1038/s41477-020-00785-x
Novák P., Neumann P., Macas J. (2020) Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2 Nature Protocols 15: 3745-3776.
DOI: 10.1038/s41596-020-0400-y
Oliveira L., Neumann P., Jang T., Klemme S., Schubert V., Koblížková A., Houben A., Macas J. (2020) Mitotic spindle attachment to the holocentric chromosomes of Cuscuta europaea does not correlate with the distribution of CENH3 chromatin Frontiers in plant science 10: 1799.
DOI: 10.3389/fpls.2019.01799
Schubert V., Neumann P., Marques A., Heckmann S., Macas J., Pedrosa-Harand A., Schubert I., Jang T., Houben A. (2020) Super-Resolution Microscopy Reveals Diversity of Plant Centromere Architecture International Journal of Molecular Sciences 21 (10): 3488.
DOI: 10.3390/ijms21103488
Vondrak T., Avila Robledillo L., Novák P., Koblížková A., Neumann P., Macas J. (2020) Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats The Plant Journal 101: 484–500.
DOI: 10.1111/tpj.14546
Kreplak J., Madoui M., Cápal P., Novák P., Labadie K., Aubert G., Bayer P.E., Gali K.K., Syme R.A., Main D., Klein A., Bérard A., Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H.T., Kougbeadjo A., Térézol M., Huneau C., Turo Ch.J., Mohellibi N., Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J.-M., Batley J., Le Paslier M.-Ch., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J., Macas J., Doležel J., Wincker P., Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nature Genetics 51: 1411–1422.
DOI: 10.1038/s41588-019-0480-1
Neumann P., Novák P., Hoštáková N., Macas J. (2019) Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification Mobile DNA 10: DOI: 10.1186/s13100-018-0144-1
Avila Robledillo L., Koblížková A., Novák P., Böttinger K., Vrbová I., Neumann P., Schubert I., Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports 8: 5838.
DOI: 10.1038/s41598-018-24196-3
Novák P., Avila Robledillo L., Koblížková A., Vrbová I., Neumann P., Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research 45 (12): e11.
DOI: 10.1093/nar/gkx257


Biology Centre CAS
Institute of Plant Molecular Biology
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