Publications
| Total found: 175 records |
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Novák P.,
Neumann P.,
Macas J. (2010) Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data BMC Bioinformatics
11: 378-389.
DOI: 10.1186/1471-2105-11-378 |
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Jensen T.,
Novák P., Wnek S., Gandolfi A., Futscher B. (2009) Arsenicals produce stable progressive changes in DNA methylation patterns that are linked to malignant transformation of immortalized urothelial cells Toxicology and Applied Pharmacology
241: 221-229.
DOI: 10.1016/j.taap.2009.08.019 |
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Macas J.,
Koblížková A.,
Navrátilová A.,
Neumann P. (2009) Hypervariable 3' UTR region of plant LTR-retrotransposons as a source of novel satellite repeats Gene
448: 198-206.
DOI: 10.1016/j.gene.2009.06.014 |
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Novák P., Jensen T., Garbe J., Sampfer M., Futscher B. (2009) Stepwise DNA Methylation Changes Are Linked to Escape from Defined Proliferation Barriers and Mammary Epithelial Cell Immortalization Cancer Research
69: 5251-5258.
DOI: 10.1158/0008-5472.CAN-08-4977 |
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Smýkal P., Kalendar R., Ford R.,
Macas J., Griga M. (2009) Evolutionary conserved lineage of Angela-family retrotransposons as a genome-wide microsatellite repeat dispersal agent Heredity
103: 157-167.
DOI: 10.1038/hdy.2009.45 |
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Čermák T., Kubát Z., Hobza R.,
Koblížková A., Widmer A.,
Macas J., Vyskot B., Kejnovský E. (2008) Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes Chromosome Research
16: 961-976.
DOI: 10.1007/s10577-008-1254-2 |
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Jensen T.,
Novák P., Eblin K., Gandolfi A., Futscher B. (2008) Epigenetic remodeling during arsenical-induced malignant transformation Carcinogenesis
29: 1500-1508.
DOI: 10.1093/carcin/bgn102 |
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Vrba , Junk D.,
Novák P., Futscher B. (2008) P53 induces distinct epigenetic states at its direct target promoters BMC Genomics
9: 486.
DOI: 10.1186/1471-2164-9-486 |
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Navrátilová A.,
Koblížková A.,
Macas J. (2008) Survey of extrachromosomal circular DNA derived from plant satellite repeats BMC Plant Biology
8: 90.
DOI: 10.1186/1471-2229-8-90 |
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Novák P., Jensen T., Oshiro M., Watts G., Kim C., Futscher B. (2008) Agglomerative epigenetic aberrations are a common event in human breast cancer Cancer Research
68: 8616-8625.
DOI: 10.1158/0008-5472.CAN-08-1419 |
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Steinbauerová V.,
Neumann P.,
Macas J. (2008) Experimental evidence for splicing of intron-containing transcripts of plant LTRL retrotransposon Ogre Molecular Genetics and Genomics
280: 427-436.
DOI: 10.1007/s00438-008-0376-8 |
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Hřibová E., Doleželová M., Town C.,
Macas J., Doležel J. (2007) Isolation and characterization of the highly repeated fraction of the banana genome Cytogenetics and Genome Research
119: 268-274.
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Lermontova I., Schubert V., Bornke F.,
Macas J., Schubert I. (2007) Arabidopsis CBF5 interacts with the H/ACA snoRNP assembly factor NAF1 Plant Molecular Biology
65: 615-626.
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Macas J.,
Neumann P. (2007) Ogre elements - a distinct group of plant Ty3/gypsy-like retrotransposons Gene
390: 108-116.
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Macas J.,
Neumann P.,
Navrátilová A. (2007) Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula BMC Genomics
8: 427.
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Neumann P., Yan H., Jiang J. (2007) The centromeric retrotransposons of rice are transcribed and differentially processed by RNA interference Genetics
176: 749-761.
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Lee H.,
Neumann P.,
Macas J., Jiang J. (2006) Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice Molecular Biology and Evolution
23: 2505-2520.
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Macas J.,
Navrátilová A.,
Koblížková A. (2006) Sequence homogenization and chromosomal localization of VicTR-B satellites differ between closely related Vicia species Chromosoma
115: 437-447.
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Neumann P.,
Koblížková A., Navratilová A.,
Macas J. (2006) Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement Genetics
173: 1047-1056.
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Novák P., Jensen T., Oshiro M., Wozniak R.,
Nouzová M., Watts G., Klimecki W., Kim C., Futscher B. (2006) Epigenetic inactivation of the HOXA gene cluster in breast cancer Cancer Research
66: 10664-10670.
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