Publications
| Total found: 163 records |
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Schubert V.,
Neumann P., Marques A., Heckmann S.,
Macas J., Pedrosa-Harand A., Schubert I.,
Jang T., Houben A. (2020) Super-Resolution Microscopy Reveals Diversity of Plant Centromere Architecture International Journal of Molecular Sciences
21 (10): 3488.
DOI: 10.3390/ijms21103488 |
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Vondrak T.,
Avila Robledillo L.,
Novák P.,
Koblížková A.,
Neumann P.,
Macas J. (2020) Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats The Plant Journal
101: 484–500.
DOI: 10.1111/tpj.14546 |
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Finke A., Mandáková T., Nawaz K., Vu G.,
Novák P.,
Macas J., Lysak M.A., Pečinka A. (2019) Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda The Plant Journal
99: 1066–1079.
DOI: doi.org/10.1111/tpj.14380 |
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Kapustová V., Tulpová Z., Toegelová H.,
Novák P.,
Macas J., Karafiátová M., Doležel J., Šimková H. (2019) The Dark Matter of Large Cereal Genomes: Long Tandem Repeats International journal of molecular sciences
20 (10): 2483.
DOI: 10.3390/ijms20102483 |
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Kreplak J., Madoui M., Cápal P.,
Novák P., Labadie K., Aubert G., Bayer P.E., Gali K.K., Syme R.A., Main D., Klein A., Bérard A.,
Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee H.T., Kougbeadjo A., Térézol M., Huneau C., Turo Ch.J., Mohellibi N.,
Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury J.-M., Batley J., Le Paslier M.-Ch., Ellis N., Warkentin T., Coyne C., Salse J., Edwards D., Lichtenzveig J.,
Macas J., Doležel J., Wincker P., Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nature Genetics
51: 1411–1422.
DOI: 10.1038/s41588-019-0480-1 |
| Neumann P., Novák P., Hoštáková N., Macas J. (2019) Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification Mobile DNA 10: DOI: 10.1186/s13100-018-0144-1 |
| Tulpová Z., Toegelová H., Lapitan N.L.V., Peairs F.B., Macas J., Novák P., Lukaszewski A.J., Kopecký D., Mazáčová M., Vrána J., Holušová K., Leroy P., Doležel J., Šimková H. (2019) Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies The Plant Genome 12 (2): DOI: 10.3835/ plantgenome2018.09.0065 |
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Wu D.D., Ruban A., Fuchs J.,
Macas J.,
Novák P., Vaio M., Zhou Y.H., Houben A. (2019) Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes New Phytologist
223: 1340–1352.
DOI: 10.1111/nph.15875 |
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Avila Robledillo L.,
Koblížková A.,
Novák P.,
Böttinger K.,
Vrbová I.,
Neumann P., Schubert I.,
Macas J. (2018) Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing Scientific Reports
8: 5838.
DOI: 10.1038/s41598-018-24196-3 |
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McCann J., Jang T.,
Macas J., Schneeweiss G., Matzke N.J.,
Novák P., Stuessy T.F., Villasenor J.L., Weiss-Schneeweiss H. (2018) Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae) Systematic Biology
67 (6): 1010–1024.
DOI: 10.1093/sysbio/syy024 |
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Clarke J.D.,
Novák P., Lake A., Hardwick R., Cherrington N. (2017) Impaired N-linked glycosylation of uptake and efflux transporters in human non-alcoholic fatty liver disease Liver International
37 (7): 1074-1081.
DOI: 10.1111/liv.13362 |
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Han J.H., Dzierlenga A.L., Lu Z., Billheimer D., Torabzadeh E., Lake A., Li H.,
Novák P., Shipkova P., Aranibar N. (2017) Metabolomic Profiling Distinction of Human Nonalcoholic Fatty Liver Disease Progression from a Common Rat Model Obesity
26 (6): 1069-1076.
DOI: 10.1002/oby.21855 |
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Novák P.,
Avila Robledillo L.,
Koblížková A.,
Vrbová I.,
Neumann P.,
Macas J. (2017) TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads Nucleic Acids Research
45 (12): e11.
DOI: 10.1093/nar/gkx257 |
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Ribeiro T., Marques A.,
Novák P., Schubert V., Vanzela A.,
Macas J., Houben A., Pedrosa-Harand A. (2017) Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species Chromosoma
126: 325-335.
DOI: 10.1007/s00412-016-0616-3 |
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Wang G., He Q.,
Macas J.,
Novák P.,
Neumann P., Meng D., Zhao H., Guo N., Han S., Zong M., Jin W., Liu F. (2017) Karyotypes and distribution of tandem repeat sequences in Brassica nigra determined by fluorescence in situ hybridization Cytogenetics and genome research
152: 158-165.
DOI: 10.1159/000479179 |
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Boutte J., Aliaga B., Lima O., Carvalho J., Ainouche A.,
Macas J., Rousseau-Gueutin M., Coriton O., Ainouche M., Salmon A. (2016) Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima G3: Genes, Genomes, Genetics
6: 29-40.
DOI: 10.1534/g3.115.023242 |
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Kowar T., Zakrzewski F.,
Macas J.,
Koblížková A., Viehoever P., Weisshaar B., Schmidt T. (2016) Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta Vulgaris) BMC Plant biology
16: 120.
DOI: 10.1186/s12870-016-0805-5 |
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Kumke K.,
Macas J., Fuchs J., Altschmied L., Kour J., Dhar M., Houben A. (2016) Plantago lagopus B Chromosome Is Enriched in 5S rDNA-Derived Satellite DNA Cytogenetic and genome research
148: 68-73.
DOI: 10.1159/000444873 |
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Lake A., Chaput A.L.,
Novák P., Cherrington N., Smith C.L. (2016) Transcription factor binding site enrichment analysis predicts drivers of altered gene expression in nonalcoholic steatohepatitis Biochemical Pharmacology
122: 62-71.
DOI: 10.1016/j.bcp.2016.11.006 |
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Neumann P., Schubert V.,
Fuková I.,
Manning Jr J., Houben A.,
Macas J. (2016) Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes Frontiers in plant science
7: 234.
DOI: 10.3389/fpls.2016.00234 |
