Publications
| Total found: 83 records |
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Pagán H.,
Macas J.,
Novák P., Mcculloch E., Stevens R., Ray D. (2012) Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats Genome Biology and Evolution
4: 575-585.
DOI: 10.1093/gbe/evs038 |
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Piednoël M., Aberer A., Schneeweiss G.,
Macas J.,
Novák P., Gundlach H., Temsch E., Renner S. (2012) Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae Molecular Biology and Evolution
29: 3601-3611.
DOI: 10.1093/molbev/mss168 |
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Renny-Byfield S., Kovařík A., Chester M., Nichols R., Macas J.,
Novák P., Leitch A. (2012) Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum PLoS ONE
7: e36963.
DOI: 10.1371/journal.pone.0036963 |
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Lake A.,
Novák P., Fisher C., Jackson J., Hardwick R., Billheimer D., Klimecki W., Cherrington N. (2011) Analysis of Global and Absorption, Distribution, Metabolism, and Elimination Gene Expression in the Progressive Stages of Human Nonalcoholic Fatty Liver Disease Drug Metabolism and Disposition
39: 1954-1960.
DOI: 10.1124/dmd.111.040592 |
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Macas J., Kejnovský E.,
Neumann P.,
Novák P.,
Koblížková A., Vyskot B. (2011) Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia PLoS ONE
6: e27335.
DOI: 10.1371/journal.pone.0027335 |
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Renny-Byfield S., Chester M., Kovařík A., Le Comber S., Grandbastien M., Deloger M., Nichols R., Macas J.,
Novák P., Chase M., Leitch A. (2011) Next generation sequencing reveals genome downsizing in allopolyploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs Molecular Biology and Evolution
28: 2843-2854.
DOI: 10.1093/molbev/msr112 |
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Steinbauerová V.,
Neumann P.,
Novák P.,
Macas J. (2011) A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons Genetica
139: 1543-1555.
DOI: 10.1007/s10709-012-9654-9 |
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Torres G., Gong Z., Iovene M., Hirsch C., Buell C., Bryan G.,
Novák P., Macas J., Jiang J. (2011) Organization and evolution of subtelomeric satellite repeats in the potato genome G3: Genes, Genomes, Genetics
1: 85-92.
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Macas J.,
Neumann P.,
Novák P., Jiang J. (2010) Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data Bioinformatics
26: 2101-2108.
DOI: 10.1093/bioinformatics/btq343 |
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Novák P.,
Neumann P.,
Macas J. (2010) Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data BMC Bioinformatics
11: 378-389.
DOI: 10.1186/1471-2105-11-378 |
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Jensen T.,
Novák P., Wnek S., Gandolfi A., Futscher B. (2009) Arsenicals produce stable progressive changes in DNA methylation patterns that are linked to malignant transformation of immortalized urothelial cells Toxicology and Applied Pharmacology
241: 221-229.
DOI: 10.1016/j.taap.2009.08.019 |
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Novák P., Jensen T., Garbe J., Sampfer M., Futscher B. (2009) Stepwise DNA Methylation Changes Are Linked to Escape from Defined Proliferation Barriers and Mammary Epithelial Cell Immortalization Cancer Research
69: 5251-5258.
DOI: 10.1158/0008-5472.CAN-08-4977 |
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Jensen T.,
Novák P., Eblin K., Gandolfi A., Futscher B. (2008) Epigenetic remodeling during arsenical-induced malignant transformation Carcinogenesis
29: 1500-1508.
DOI: 10.1093/carcin/bgn102 |
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Vrba , Junk D.,
Novák P., Futscher B. (2008) P53 induces distinct epigenetic states at its direct target promoters BMC Genomics
9: 486.
DOI: 10.1186/1471-2164-9-486 |
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Novák P., Jensen T., Oshiro M., Watts G., Kim C., Futscher B. (2008) Agglomerative epigenetic aberrations are a common event in human breast cancer Cancer Research
68: 8616-8625.
DOI: 10.1158/0008-5472.CAN-08-1419 |
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Novák P., Jensen T., Oshiro M., Wozniak R.,
Nouzová M., Watts G., Klimecki W., Kim C., Futscher B. (2006) Epigenetic inactivation of the HOXA gene cluster in breast cancer Cancer Research
66: 10664-10670.
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Novák P., Krofta K.,
Matoušek J. (2006) Chalcone synthase homologues from Humulus lupulus: some enzymatic properties and expression Biologia Plantarum
50: 48-54.
DOI: 10.1007/s10535-005-0073-y |
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Matoušek J., Vrba ,
Novák P., Patzak J., De Keukeleire J.,
Škopek J., Heyerick A., Roldán-Ruiz I., De Keukeleire D. (2005) Cloning and molecular analysis of the regulatory factor HiMyb1 in hop (Humulus lupulus L.) and the potential of hop to produce bioactive prenylated flavonoids Journal of Agricultural and Food Chemistry
53: 4793-4798.
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Novák P.,
Matoušek J.,
Bříza J. (2003) Valerophenone synthase-like chalcone synthase homologues in Humulus lupulus Biologia Plantarum
46: 375-381.
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Matoušek J.,
Novák P.,
Bříza J., Patzak J.,
Niedermeierová H. (2002) Cloning and characterisation of chs-specific DNA and cDNA sequences from hop (Humulus lupulus L.) Plant Science
62: 1007-1018.
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