Publications
| Total found: 126 records |
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Kelly L., Renny-Byfield S., Pellicer J.,
Macas J.,
Novák P.,
Neumann P., Lysák M., Day P., Berger M., Fay M., Nichols R., Leitch A., Leitch I. (2015) Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size New Phytologist
208: 596-607.
DOI: 10.1111/nph.13471 |
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Macas J.,
Novák P., Pellicer J., Čížková J.,
Koblížková A.,
Neumann P.,
Fuková I., Doležel J., Kelly L., Leitch I. (2015) In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae PLoS ONE
10 (11): e0143424.
DOI: 10.1371/journal.pone.0143424 |
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Marques A., Ribeiro T.,
Neumann P.,
Macas J.,
Novák P., Schubert V., Pellino M., Fuchs J., Ma W., Kuhlmann M., Brandt R., Vanzela A., Beseda T., Šimková H., Pedrosa-Harand A., Houben A. (2015) Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin Proceedings of the National Academy of Sciences of the United States of America
112: 13633-13638.
DOI: 10.1073/pnas.1512255112 |
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Neumann P., Pavliková Z.,
Koblížková A.,
Fuková I., Jedličková V.,
Novák P.,
Macas J. (2015) Centromeres off the hook: massive changes in centromere size and structure following duplication of CenH3 gene in Fabeae species Molecular biology and evolution
32 (7): 1862-1879.
DOI: 10.1093/molbev/msv070 |
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Tran T., Cao H., Jovtchev G.,
Neumann P.,
Novák P., Fojtová M., Vu G.,
Macas J., Fajkus J., Schubert I., Fuchs J. (2015) Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea Plant Journal
84 (6): 1087-1099.
DOI: http://dx.doi.org/10.1111/tpj.13058 |
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Tran T., Cao H., Jovtchev G.,
Novák P., Vu G.,
Macas J., Schubert I., Fuchs J. (2015) Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences Frontiers in Plant Science
6: 613.
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| Vu G., Schmutzer T., Bull F., Cao H., Fuchs J., Tran T., Jovtchev G., Pistrick K., Stein N., Pečinka A., Neumann P., Novák P., Macas J., Dear P., Blattner F., Scholz U., Schubert I. (2015) Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus Plant Genome 8: DOI: 10.3835/plantgenome2015.04.0021 |
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Weiss-Schneeweiss H., Leicht A., McCann J., Jang T.,
Macas J. (2015) Employing next generation sequencing to explore the repeat landscape of the plant genome. Next-Generation Sequencing in Plant Systematics. Koenigstein : Koeltz Scientific Books, 2015 - (Hörandl, E.; Appelhans, M.)
ISBN 978-3-87429-492-8: 155-179.
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Emadzade K., Jang T.,
Macas J., Kovařík A.,
Novák P., Parker J., Weiss-Schneeweiss H. (2014) Differential amplification of satellite PaB6 in chromosomally hyper-variable Prospero autumnale complex (Hyacinthaceae) Annals of botany
114 (8): 1597-1608.
DOI: 10.1093/aob/mcu178 |
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Novák P., Hřibová E.,
Neumann P.,
Koblížková A., Doležel J.,
Macas J. (2014) Genome-wide analysis of repeat diversity across the family Musaceae PLoS ONE
9: e98918.
DOI: 10.1371/journal.pone.0098918 |
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Zhang H.,
Koblížková A., Wang K., Gong Z., Oliveira L., Torres G., Wu Y., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2014) Boom-bust turnovers of megabase-sized centromeric DNA in Solanum species: Rapid evolution of DNA sequences associated with centromeres Plant Cell
26: 1436-1447.
DOI: 10.1105/tpc.114.123877 |
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Heckmann S.,
Macas J., Kumke K., Fuchs J., Schubert V., Ma L.,
Novák P.,
Neumann P., Taudien S., Platzer M., Houben A. (2013) The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization Plant Journal
73: 555-565.
DOI: 10.1111/tpj.12054 |
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Klemme S., Banaei-Moghaddam A.,
Macas J., Wicker T.,
Novák P., Houben A. (2013) High-copy sequences reveal distinct evolution of the rye B chromosome New Phytologist
199: 550-558.
DOI: 10.1111/nph.12289 |
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Novák P.,
Neumann P., Pech J., Steinhaisl J.,
Macas J. (2013) RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads Bioinformatics
29: 792-793.
DOI: 10.1093/bioinformatics/btt054 |
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Renny-Byfield S., Kovařík A., Kelly L.,
Macas J.,
Novák P., Chase M., Nichols R., Pancholi M., Grandbastien M., Leitch A. (2013) Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences. Plant Journal
74: 829-839.
DOI: 10.1111/tpj.12168 |
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Banaei-Moghaddam A., Schubert V., Kumke K., Weiβ O., Klemme S., Nagaki K.,
Macas J., González-Sánchez M., Heredia V., Gómez-Revilla D., González-García M., Vega J., Puertas-Houben A. (2012) Nondisjunction in Favor of a Chromosome: The Mechanism of Rye B Chromosome Drive during Pollen Mitosis Plant Cell
24: 4124-4134.
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Gong Z., Wu Y.,
Koblížková A., Torres G., Wang K., Iovene M.,
Neumann P., Zhang W.,
Novák P., Buell C.,
Macas J., Jiang J. (2012) Repeatless and repeat-based centromeres in potato: implications for centromere evolution Plant Cell
24: 3559-3574.
DOI: 10.1105/tpc.112.100511 |
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Kelly L., Leitch A., Fay M., Renny-Byfield S., Pellicer J.,
Macas J., Leitch I. (2012) Why size really matters when sequencing plant genomes Plant Ecology & Diversity
5: 415-524.
DOI: 10.1080/17550874.2012.716868 |
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Martis M., Klemme S., Banaei-Moghaddam A., Blattner F.,
Macas J., Schmutzer T., Scholz U., Gundlach H., Wicker T., Šimková H.,
Novák P.,
Neumann P., Kubaláková M., Bauer E., Haseneyer G., Fuchs J., Doležel J., Stein N., Mayer K., Houben A. (2012) Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences Proceedings of the National Academy of Sciences of the United States of America
109: 13343-13346.
DOI: 10.1073/pnas.1204237109 |
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Matyášek R., Renny-Byfield S., Fulneček J.,
Macas J., Grandbastien M., Nichols R., Kovařík A., Leitch A. (2012) Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids BMC Genomics
13: 722.
DOI: 10.1186/1471-2164-13-722 |
