Ing. Tomáš Kocábek, Ph.D.

Job Position: Head of department - Molecular genetics

Contact details

Phone: +420 387 775 543; +420 387 775 508
E-mail: kocabek@umbr.cas.cz
Room: 306,307

Description

Entrusted head of the Molecular genetics department since 1st April.

Publications
Total found: 33 records
Awasthi P., Kocábek T., Mishra A., Sukumari Nath V., Shrestha A., Matoušek J. (2021) Establishment of CRISPR/Cas9 mediated targeted mutagenesis in hop (Humulus lupulus) Plant Physiology and Biochemistry 161 : 1-7.
DOI: 10.1016/j.plaphy.2021.01.006
Sukumari Nath V., Mishra A., Awasthi P., Shrestha A., Matoušek J., Jakse J., Kocábek T., Khan A. (2021) Identification and characterization of long non-coding RNA and their response against Citrus bark cracking viroid infection in Humulus lupulus Genomics on-line first : DOI: 10.1016/j.ygeno.2021.05.029
Matoušek J., Steinbachová L., Záveská Drábková L., Kocábek T., Potěšil D., Mishra A., Honys D., Steger G. (2020) Elimination of viroids from tobacco pollen involves a decrease in propagation rate and an increase of the degradation processes International Journal of Molecular Sciences 21 : 3029.
DOI: 10.3390/ijms21083029
Mishra A., Kocábek T., Sukumari Nath V., Awasthi P., Shrestha A., Killi U., Jakse J., Patzak J., Krofta K., Matoušek J. (2020) Dissection of Dynamic Transcriptome Landscape of Leaf, Bract, and Lupulin Gland in Hop (Humulus lupulus L.) International Journal of Molecular Sciences 21 (1) : 233.
DOI: 10.3390/ijms21010233
Shrestha A., Mishra A., Matoušek J., Steinbachová L., Potměšil D., Sukumari Nath V., Awasthi P., Kocábek T., Jakse J., Záveská Drábková L., Zdráhal Z., Honys D., Steger G. (2020) Integrated Proteo-Transcriptomic Analyses Reveal Insights into Regulation of Pollen Development Stages and Dynamics of Cellular Response to Apple Fruit Crinkle Viroid (AFCVd)-Infection in Nicotiana tabacum International Journal of Molecular Sciences 21 : 8700.
DOI: 10.3390/ijms21228700
Sukumari Nath V., Shrestha A., Awasthi P., Mishra A., Kocábek T., Matoušek J., Sečnik A., Jakše J., Radišek S., Hallan V. (2020) Mapping the Gene Expression Spectrum of Mediator Subunits in Response to Viroid Infection in Plants International Journal of Molecular Sciences 21 : 2498.
DOI: 10.3390/ijms21072498
Mishra A., Siglová K., Kocábek T., Duraisamy G., Patzak J., Ono E., Matoušek J. (2019) Analysis of promoters of genes putatively involved in regulation of lupulin and dissecting the role of miRNAs in the regulatory network Acta Horticulture 1236 : 153-157.
DOI: 10.17660/ActaHortic.2019.1236.20
Duraisamy G., Mishra A., Kocábek T., Matoušek J. (2018) Activation of polyketide synthase gene promoter in Cannabis sativa by heterologous transcription factors derived from Humulus lupulus Biologia Plantarum 62 : 250-260.
DOI: 10.1007/s10535-017-0766-z
Kocábek T., Mishra A., Matoušek J., Patzak J., Lomnická A., Khare M., Krofta K. (2018) The R2R3 transcription factor HlMYB8 and its role in flavonoid biosynthesis in hop (Humulus lupulus L.) Plant science 269 : 32-46.
DOI: 10.1016/j.plantsci.2018.01.004
Mishra A., Duraisamy G., Khare M., Kocábek T., Jakse J., Bříza J., Patzak J., Sano T., Matoušek J. (2018) Genome-wide transcriptome profiling of transgenic hop (Humulus lupulus L.) constitutively overexpressing HlWRKY1 and HlWDR1 transcription factors BMC Genomics 19 : 739.
DOI: 10.1186/s12864-018-5125-8
Mishra A., Kumar A., Mishra D., Sukumari Nath V., Jakše J., Kocábek T., Killi U., Morina F., Matoušek J. (2018) Genome-Wide Transcriptomic Analysis Reveals Insights into the Response to Citrus bark cracking viroid (CBCVd) in Hop (Humulus lupulus L.) Viruses 10 : 570.
DOI: DOI: 10.3390/v10100570
Duraisamy G., Mishra A., Kocábek T., Matoušek J. (2016) Identification and characterization of promoters and cis-regulatory elements of genes involved in secondary metabolites production in hop (Humulus lupulus. L) Computational Biology and Chemistry 64 : 346–352.
DOI: 10.1016/j.compbiolchem.2016.07.010
Matoušek J., Kocábek T., Patzak J., Bříza J., Siglová K., Mishra A., Duraisamy G., Týcová A., Ono E., Krofta K. (2016) The "putative" role of transcription factors from HlWRKY family in the regulation of the final steps of prenylflavonid and bitter acids biosynthesis in hop (Humulus lupulus L.) Plant molecular biology 92 : 263-277.
DOI: 10.1007/s11103-016-0510-7
Matoušek J., Piernikarczyk R., Týcová A., Duraisamy G., Kocábek T., Steger G. (2015) Expression of SANT/HTH Myb mRNA, a plant morphogenesis-regulating transcription factor, changes due to viroid infection Journal of Plant Physiology 183 : 85-94.
DOI: 10.1016/j.jplph.2015.06.001
Matoušek J., Kocábek T., Patzak J. (2013) Molecular background and networking putatively involved in regulation of lupulin gland metabolome - Results and prospects Acta Horticulturae 1010 : 39-46.
Matoušek J., Kocábek T., Patzak J., Füssy Z., Procházková J., Heyerick A. (2012) Combinatorial analysis of lupulin gland transcription factors from R2R3Myb, bHLH and WDR families indicates a complex regulation of chs_H1 genes essential for prenylflavonoid biosynthesis in hop (Humulus lupulus L.) BMC Plant Biology 12 : 27.
DOI: 10.1186/1471-2229-12-27
Matoušek J., Patzak J., Kocábek T., Füssy Z., Stehlík J., Orctová L., Duraisamy G. (2011) Functional analyses of lupulin gland-specific regulatory factors from WD40, bHLH and Myb families of hop (Humulus lupulus L.) show formation of crucial complexes activating chs_H1. Brewing Science 64 : 151-155.
Matoušek J., Kocábek T., Patzak J., Stehlík J., Füssy Z., Krofta K., Heyerick A., Roldán-Ruiz I., Maloukh L., De Keukeleire D. (2010) Cloning and Molecular Analysis of HlbZip1 and HlbZip2 Transcription Factors Putatively Involved in the Regulation of the Lupulin Metabolome in Hop (Humulus lupulus L.) Journal of Agricultural and Food Chemistry 58 : 902-912.
DOI: 10.1021/jf9043106
Kocábek T., Svoboda Z., Al-Zwi A., Rolfe S., Fellner M. (2009) Boron-regulated hypocotyl elongation is affected in Arabidopsis mutants with defects in light signalling pathways Environmental and Experimental Botany 67 : 101-111.
DOI: 10.1016/j.envexpbot.2009.06.005
Hoyerová K., Perry L., Hand P., Laňková M., Kocábek T., May S., Kottová J., Pačes J., Napier R., Zažímalová E. (2008) Functional Characterization of PaLAX1, a Putative Auxin Permease, in Heterologous Plant Systems Plant Physiology 146 : 1128-1141.
DOI: 10.1104/pp.107.109371

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CONTACT

Biology Centre CAS
Institute of Plant Molecular Biology
Branišovská 1160/31
370 05 České Budějovice

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